adamtaranto Goto Github PK
Name: Adam Taranto
Type: User
Company: The University of Melbourne
Location: Melbourne, Australia
Name: Adam Taranto
Type: User
Company: The University of Melbourne
Location: Melbourne, Australia
Conda recipes for the bioconda channel.
Rapid discovery of reciprocal best blast pairs.
Concatenate count tables for RNA-seq reads mapped to features by htseq-count
Companion scripts for annotation of Corset generated transcript clusters.
An R workflow for creating heat-maps representing the spatial association between two genomic feature sets
Predict progenitor sequence of fungal repeat families by correcting for RIP-like mutations and cytosine deamination events. Mask RIP or deamination events from alignments.
Transfer annotations between genome assemblies using chained whole-genome alignment and UCSC LiftOver. Forked from wurmlab/flo.
Screen genomic scaffolds for regions of unusual k-mer composition.
Fetch summary data from NCBI for genbank records using GI numbers
Small script to compute coverage of contigs from reads
Unzip assembly graphs with Hi-C data and/or long reads.
Hidden Markov Models in Python, with scikit-learn like API
A knowledge engine for new students of bioinformatics.
Python utility libraries on genome assembly, annotation and comparative genomics
Low memory methods for genomic software development
Correct sequence names in LTR_Harvest GFF3 output.
Calculate observed vs expected instances of DNA-methylation motifs in gene sequences
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Minor edits to allow MITE_Hunter (Han & Wessler 2010) to use modern blast+
MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
Markovian sequence generator
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
Config scripts for managing nbgrader envs in Gitpod
Fork of nearestfeat, a tool for calculating distance between members of feature classes in a GFF annotation. Migrating to Python3
Example git repo for wehi git intro course.
Takes promer sequence matches formatted with show_coords, and reformats for use as a circos linkage track
Python3 module for running MUMmer and reading the output
Take an XML formatted multiblast result, extract genbank IDs for best x hits to each query and download a non-redundant list of matching seqs from ncbi.
Take clustered element fragment coordinates from RECON and write sequences to fasta for alignment and consensus calling.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.