Name: Aaron Atkinson
Type: User
Company: Huntsman Cancer Institute
Bio: Clinical Genomicist; Research Scientist; Clinical Liaison; Board eligible; Bioinformatics; Pipeline Development; Assay Development
Location: Salt Lake City, Utah
Blog: https://uofuhealth.utah.edu/huntsman/shared-resources/gba/bioinformatics/staff.php
Aaron Atkinson's Projects
Customizable python scripts for the concatenation of MAF files for cBioPortal.
A Pandas script to convert GATK Copy Ratio outputs into tsv files for upload into the Illumina Cohort Analyzer
Pandas flat file merge. Could elaborate to duplicate, parse, and erase temp columns.
Filtering VCFs to maintain header, but filter keywords (in this case "Foundation").
A quick Pandas script to strip complex indels and MNVs from VCFs/TSVs for Illumina Cohort Analyzer Upload