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action-sphinx-docs-to-gh-pages

GitHub Action: The sphinx documentation in a repository is compiled and deployed to GitHub Pages through the gh-pages branch.

am-segmentation

Imaging mass spectrometry ablation marks segmentation with convolutional neural networks.

anndata

Annotated data.

cellxgene-gateway

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

dask

Parallel computing with task scheduling

imageio

Python library for reading and writing image data

loompy-zarr

Experimental Zarr backend support for loompy 3

magicgui

build GUIs from python functions, using magic.

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-ome-zarr

A reader for zarr backed OME-NGFF images

napari-spatialdata

Interactive visualization of spatial omics data

ngff-writer

A writer and reader for NGFF OME-Zarr datasets

ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

prefect

The easiest way to automate your data

pydantic-yaml

YAML support for Pydantic models

python-readchar

Python library to read characters and key strokes

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scikit-image

Image processing in Python

spatial-image

A multi-dimensional spatial image data structure for scientific Python.

spatialdata

An open and universal framework for processing spatial omics data

spatialdata-io

spatialdata-plot

Static plotting for spatialdata

sphinx

The Sphinx documentation generator

sphinx-autodoc-typehints

Type hints support for the Sphinx autodoc extension

sphinx-click

A Sphinx plugin to automatically document click-based applications