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Alex's Projects

deicode icon deicode

Robust Aitchison PCA from sparse count data

dokdo icon dokdo

A Python package for microbiome sequencing analysis with QIIME 2

figaro icon figaro

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

mmvec icon mmvec

Neural networks for microbe-metabolite interaction analysis

nbzimm icon nbzimm

NBZIMM (Negative Binomial and Zero-Inflated Mixed Models)

picrust2 icon picrust2

Code, unit tests, and tutorials for running PICRUSt2

songbird icon songbird

Vanilla regression methods for microbiome differential abundance analysis

tweedieverse icon tweedieverse

Differential analysis of multi-omics data based on the Tweedie distribution

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