aexbrayat Goto Github PK

.tmux

🇫🇷 Oh My Tmux! My pretty + versatile tmux configuration that just works (imho the best tmux configuration)

aexbrayat

Config files for my GitHub profile.

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

braker

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

d3fromshiny

This is the code from a tutorial on using D3 with R Shiny

dropseqpipe

A SingleCell RNASeq pre-processing snakemake workflow

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

fasta2genotype

Convert STACKS fasta to many genotype formats

multi-metagenome

Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

parsing-repeatmasker-outputs

Few scripts facilitating the extraction of info from Repeat Masker .out files

sandr

A "search and replace" utility with some improvements (map associations for mass replacements // regular expression // algorithm to preserve letter case)

scripts

Collection of various scripts

snakevir

Metagenomic analysis of viral samples

snpweb

surround

Surround is a framework for building AI driven microservices in Python, https://surround.readthedocs.io/en/latest/

varhap

pipeline for snp detection in haploid sequence

vcfhacks

simple to use commandline programs for VCF filtering and manipulation