akhilpampana Goto Github PK

ad_finemap

Code supporting analyses in paper on fine-mapping AD loci

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

cardiogramplusc4d_gwas

cheatsheets

RStudio Cheat Sheets

colocquial

Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.

dalys_code

ditto

Variant Deleteriousness prediction tool using AI

freq-ancestry

gcp-for-bioinformatics

GCP for Bioinformatics Researchers

glgc_biology_paper

Scripts used for the manuscript "Implicating genes, pleiotropy and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis"

gnomad-browser

Explore gnomAD datasets on the web

hare

Harmonizing genetic ancestry and self-identified race/ethnicity

heritability_wgs

This repository contains the code used for estimating heritability from WGS data

hgdp_1000g_merge

Merging the HGDP and 1000 Genomes reference samples

hgdp_tgp

hisat2

Graph-based alignment (Hierarchical Graph FM index)

important

important codes

ldpredchrbychr

Make LDpred run chromosome by chromosome

mmhe

Moment matching method for SNP-based heritability estimation

nirvana

The nimble & robust variant annotator

olinkrpackage_v1

Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.

peacok

Phenome Exome Association and Correlation Of Key phenotypes

personal_codes

pgs_catalog

An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

predlmm

rfmix

RFMIX - Local Ancestry and Admixture Inference Version 2

robustbase

:exclamation: This is a read-only mirror of the CRAN R package repository. robustbase — Basic Robust Statistics. Homepage: https://robustbase.R-forge.R-project.org/ Report bugs for this package: https://R-forge.R-project.org/tracker/?atid=302&group_id=59

rx

a minimal reactive framework that borrows general ideas from React and Vue-related libraries

saigegds

Scalable Implementation of generalized mixed models using GDS files in Phenome-Wide Association Studies