akimbler Goto Github PK

afni

Official AFNI source and documentation

antspynet

Medical image analysis framework merging ANTsPy and deep learning

autocv

automatic generation of CV

bids2nda

A conversion tool for creating NDA compatible metadata representation from BIDS datasets.

bidsconvert

Stripped down port of `fiuneuro/cis-bidsify`

brainconn

A Python implementation of the brain connectivity toolbox.

cis-bidsify

Tools for Singularity- and heudiconv-based BIDSification and anonymization of MRI data optimized for the FIU HPC.

cis-bidsutils

Miscellaneous functions for working with BIDS datasets

cis-processing

Automated transfer, conversion, and processing of data acquired at the FIU Center for Imaging Science.

cis-xget

Singularity image to download data from XNAT servers.

cluster_roi

Python script to perform the spatially constrained parcellation of functional MRI data as described in Craddock et al., Human Brain Mapp., 33 (9) 2012

diss_proposal

docker-singularity-training-2019

example-datasets

Contains/will contain example datasets that implement the Psych-DS specification (psych-ds.github.io)

file_opening_presentation

fitlins

Fit Linear Models to BIDS Datasets

fiu_bootcamp_preproc

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

fsl_docker

gitignore

A collection of useful .gitignore templates

happy_vis

heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts

localizer-task

M1/V1/A1 localizer task

madlab_env

madlab_experiments

mdt-bids

bids app wrapper for microstructure diffusion toolbox

nilearn

Machine learning for NeuroImaging in Python

nimare

Coordinate- and image-based meta-analysis in Python

nipymc

Bayesian mixed-effects modeling of fMRI data in Python

nipype

Workflows and interfaces for neuroimaging packages