Comments (2)
This isn't a scater question; post on the Bioconductor support site for more relevant answers.
If you want my two cents: unfortunately, some gene symbols don't exist in the annotation DBs, because everyone has a different name for their favourite gene. This is why I believe all high-throughput datasets should be generated and published using stable gene identifiers from Ensembl or Entrez (or something equivalent for your model system). People can always convert to their own gene symbols later.
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Thanks Aaron, it did not bother the cell cycle assignment actually.
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Related Issues (20)
- plotPCA not coloring points HOT 2
- Include colData in plotReducedDim ggplot object p$data? HOT 5
- Adding alias to exprs_values argument HOT 3
- Argument naming: "assay_name" (scater) vs. "assay.type" (scuttle) HOT 2
- Use scattermore to speed up plotColData and plotReducedDim for large datasets HOT 4
- Gene names in nmf basis HOT 2
- PlotGroupedHeatmap - column clustering HOT 2
- partial match argument warning/error HOT 4
- Quantile cutoffs in UMAP plots HOT 4
- add a half violin function HOT 3
- Strange warning HOT 2
- Column names not showing up in plotGroupedHeatmap() HOT 3
- Matrix 1.6.2 update as_cholmod_sparse issue with runPCA HOT 3
- runPCA Variance Explained not Recorded HOT 1
- group_by for Faceting HOT 1
- Specifying a Custom Dimension Reduction Name Causes Plotting Error
- runPCA Target Rank Error or Additional Right Arguments Warning HOT 10
- Problem with deprecated argument in runPCA HOT 3
- Box plot instead of violin plot HOT 3
- plotReducedDim hex HOT 4
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