Comments (3)
Could you check two things?
-Given that you reached 94%, it's probable that you have written a folder with most of the segmentation already complete, but it is likely missing the last ~50 slices. If not, let me know because the issue is likely deeper.
-Are there any other files in the folder with your raw data? In particular, anything alphanumerically after all the names for the TIFFs.
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Silly me...there is a Thumbs.db Windows file....
Let me re-run the network and see but I am pretty sure this is the problem (stupid Windows!), thanks a lot!
I will report back in a few minutes
A
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Yes, exactly as predicted. Beware of Windows hidden Thumbs.db files present in each and every folder!
Thanks again, @dfriedma
A
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Related Issues (14)
- Install instructions HOT 2
- Labeling method HOT 2
- HDF5 file with pre-trained model weights in Github repo is corrupt HOT 7
- Blas SGEMM launch failed when predicting with GPU HOT 5
- `get_dir` gets thrown off by created `seg-` folder HOT 7
- A few questions HOT 1
- Hi, your work is good, and where can I find your training dataset? HOT 4
- Threshold and cells HOT 12
- Cuda / Cudnn
- Inconsistent environment
- note though that in contrast to your instructions I do not have h5py version 2.1 HOT 4
- VisibleDeprecationWarning for segment_brain.py HOT 1
- Model weights cannot be downloaded (`This repository is over its data quota`) HOT 1
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