aldertzomer Goto Github PK
Name: Aldert Zomer
Type: User
Company: Utrecht University
Bio: Associate Professor at Utrecht University, Department of Infectious Diseases & Immunology. (meta)genomes, AMR, zoonotic bugs.
Location: Utrecht
Aldert Zomer's Projects
bioconda-recipes
Conda recipes for the bioconda channel.
cgmlst
Fork of mlst of tseemann modified for cgmlst. Not very fast when used with organisms with a large number of allelic variants
cloud-genomics
Introduction to Cloud Computing for Genomics
essentials
Software for rapid analysis of transposon insertion sequencing data
fastdeme
A fast, easy solution for metagenomic data analysis - Forked from Sander Vermeulens repository, developed during his internship
genomics-workshop
Genomics Workshop Overview
microbial-genomics-2018
microbial-genomics-2019
microbial-genomics-2022
https://aldertzomer.github.io/Microbial-Genomics-2022/ Day 4 and 5 of the Microbial Genomics course 2022
molecularepidemiology_analysiswgs
organization-genomics
Project Organization and Management for Genomics
resistnanome
A pipeline to extract microbiome and resistome profiles from Nanopore data from the internship of https://github.com/AStieva/
rfplasmid
Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
scripts
Bash scripts that may be useful to others
shell-genomics
Introduction to the Command Line for Genomics
structuralcolor
Predicting structural color from genome sequences.
structuralcolour
Predicting structural colour from genome sequences.
vibrio_parahaemolyticus_genomoserotyping
Kaptive database of O and K antigen clusters of Vibrio parahaemolyticus
wrangling-genomics
Data Wrangling and Processing for Genomics
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