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cpalm

C-based photoactivated localization microscopy tool

delocate

Fork of the excellent delocate library with an option to exclude some libraries

dpsp

Dirichlet process mixture models for single particle tracking

emdiff

Maximum likelihood and variational Bayes analysis of single particle tracking data

example-pkg-resources

Example of a hybrid C++/Python package bundled with non-code data files

example_project_pybind11_pep518

An example project that uses Pybind11 and PEP518

fbm_sim

Fast simulator for short fractional Brownian motion (FBM) trajectories in pure Python

gibberdiff

Gibbs sampling for finite-state mixtures of regular Brownian motions

idrscan

Calculate intrinsic disorder scores on a by-exon basis

link-against-numpy-blas

Example pybind11 project that attempts to link against numpy's internal BLAS/LAPACK

mtt_python

Python version of the multiple target tracing (MTT) algorithm to localize and track fast-moving fluorophores in temporal super-resolution microscopy

nflows

Example implementation of normalizing flows in numpy

pitifful

Standalone C++ header-only TIFF reader with limited functionality

pybind11_example

Practice project using pybind11 with numpy arrays

pyspaz

Single molecule tracking utilities

quot

A simple single molecule tracking pipeline with a graphic user interface for quality control.

sarase

More experiments with poetry/pybind11 projects

sargasso

Experiments in packaging/distributing C++/Python projects using pybind11 and external libraries

saspt

State arrays for single particle tracking

spagl

Fluorescent single particle tracking aggregate likelihood functions

sptpalmsim

An optical-dynamic simulator for experiments supporting a state array paper

strobemodels

Some diffusion models for stroboscopic particle tracking

strobesim

Simulate stroboscopic single particle tracking experiments with different kinds of motion

tifffile

Read and write TIFF files. Forked from https://pypi.org/project/tifffile

translateexon

Segment and translate exons with the proper phase information

yeast-crispri

zzernike

Use the Zernike transform to estimate z-positions in single molecule tracking, given images in two channels