alexanderaivazidis Goto Github PK
Type: User
Company: Sanger Institute
Bio: PhD student at Sanger Institute/Cambridge University. Working on topics in Genetics, Spatial Transcriptomics and Neuroscience.
Location: Cambridge
Type: User
Company: Sanger Institute
Bio: PhD student at Sanger Institute/Cambridge University. Working on topics in Genetics, Spatial Transcriptomics and Neuroscience.
Location: Cambridge
Loading Allen RNAseq data into R
scRNAseq data for axonGrowth project
Plot BrainSpan Data
Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
Experimental cell2fate models, not yet ready for the main repository.
Cell2fate tutorial notebooks
Scripts to extract cellTypeMarkers
Scripts for using existing deconvolution algorithms, such as e.g. MuSiC
Test inference of discrete latent variables
Benchmarking trajectory mapping methods
Selecting smFISH markers for human fetal brain cell types
tbd
Try to analyze ISS data.
tbd
methods and applications for cell type marker selection
Building Gene Sets and Mapping mFISH Data
Analysing RNAscope data from MH_DDD mouse models
Minimum Examples
Analysis of all available adult mouse striatum scRNAseq
R functions I find useful
tbd
Data Analysis from Trial of new Nanostring Technology
Brain Nuclei Sequncing Protocol Validation
tbd
Exploring publically available fetal brain transcriptomics datasets
Statistical analysis for multiplexed RNAscope
Single-Cell Analysis in Python. Scales to >1M cells.
RNA Velocity generalized through dynamical modeling
QC for snSeq trial run on mouse brain primary visual cortex
Usefool tools for spatial transcriptomics
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
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The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.