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Alex Popinga's Projects

aars icon aars

The aminoacyl-tRNA synthetase (aaRS) enzymes may be key to the understanding of the origins of life on Earth. This project investigates their evolutionary relationships and trajectories across all 3 domains of life.

aars-pipeline icon aars-pipeline

Reorganised files from work on the aminoacyl-tRNA synthetases

autocat icon autocat

Bayesian Autocatalytic Networks for General Systems

beast2 icon beast2

Bayesian Evolutionary Analysis by Sampling Trees

coalsir icon coalsir

Coalescent SIR (implementation of Volz SIR model) in BEAST2 - Genetics paper and related files, scripts, etc.

html icon html

For HTML-related projects with Aiden :)

rando-lit icon rando-lit

Repo for literature that is not necessarily relevant to my current projects.

structural-phylogenetics-bootstrap icon structural-phylogenetics-bootstrap

Scripts for preparing, running and processing MD and MC trajectories and for running the structure-based 'bootstrap' to gauge the robustness of structural phylogenetic relationships.

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