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Alex Sodt's Projects

clustering icon clustering

Configurational clustering of ATP in a protein's binding pocket.

config_hmm icon config_hmm

HMM for Lo/Ld and configurational identification

namd_profile_patch icon namd_profile_patch

Patch file for NAMD 2.12 source to modify production of lateral pressure profile

pfft_brush icon pfft_brush

Software to compute the scattering intensity from a lipid bilayer, including structural correlations in the bilayer plane.

shells icon shells

Programs for computing the redistribution of lipids around a protein

umcp icon umcp

UMCP continuum modeling software

voronoi icon voronoi

voronoi applied to bilayers from simulations

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