Comments (1)
helen-m-lin
commented on July 19, 2024
10 prefixes in the open data bucket had procedures.json like so:
[
{
"Type": "procedure_type",
...
},
...
]
PR #72 will handle this by marking these as corrupt and disregarding them when creating new metadata.nd.json.
Prefixes with invalid procedures.json:
- mesoSPIM_125L_2022-08-18_17-05-00
- mesoSPIM_125R_2022-07-04_15-52-00
- exaSPIM_125L_2022-08-05_17-25-36
- exaSPIM_141R_2022-08-18_23-52-21
- exaSPIM_146_2022-10-06_15-36-15
- exaSPIM_146_2022-10-08_00-01-45
- exaSPIM_609107_2022-09-21_14-48-48
- exaSPIM_609281_2022-11-03_13-49-18
- exaSPIM_614978_2022-10-21_12-27-00
- exaSPIM_614978_stitching_test_2022-10-25_12-49-57
from aind-data-asset-indexer.
Related Issues (20)
- Update Dockerfile for running update_docdb.py script
- missing assets from docdb HOT 3
- Job to populate S3 with metadata.nd.json files
- Add main job runners that loop through bucket. Remove legacy jobs.
- Improve logging HOT 1
- Update README
- AIND Bucket Indexer should also update individual metadata files in S3 HOT 1
- Run AIND bucket indexer on a schedule (twice a day) HOT 1
- Reference docdb secret from Parameter Store parameters
- Refactor `does_s3_prefix_exist` to use head_object operation
- Remove redundant `copy_original_md_subdir` from utils
- Add missing check for /original_metadata for edge case HOT 2
- Check if s3 prefix format matches expected regex HOT 1
- Check if _id exists in metadata.nd.json
- Handle empty buckets
- Fix indexer issue HOT 2
- duplicate records for same prefix HOT 1
- Adjust `external_links` input expectations HOT 2
- indexer does not check `is_dict_corrupt` for existing metadata.nd.json before writing to docdb
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from aind-data-asset-indexer.