Name: Martin Larralde
Type: User
Company: LUMC (ex EMBL) @zellerlab
Bio: PhD candidate in Bioinformatics, passionate about programming, SIMD-enthusiast, Pythonista, Rustacean. I write poems, and sometimes they are executable.
Twitter: althonos
Location: The Hague, Netherlands
Martin Larralde's Projects
Some anime logos I remade myself in vector graphics
A Snakemake pipeline to copy annotations between GenBank files
Conda recipes for the bioconda channel.
A simple Rust macro to derive blanket implementations for your traits.
A minimal webapp to display Botrytis cinerea sequencing data using CherryPy, Jinja2 and Bootstrap
A 10x faster drop-in reimplementation of cksfv using Rust and the crc32fast crate.
My own configuration files for the fish shell
💥 Fast matrix-multiplication as a self-contained Python library – no system dependencies!
A Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes.
Quick and dirty CLI app to backup an eLabFTW instance using the HTTP API
The PICO-8 font to use with embedded-graphics.
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
A progress bar for ffmpeg. Yay !
Rust bindings to Flips, the Floating IPS patcher.
Pyfilesystem2 for various archive filesystems
Pyfilesystem2 over SMB using pysmb
Pyfilesystem2 over SSH using paramiko
A Python interface to gb-io, a fast GenBank parser written in Rust.
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
information artifact ontology
Another API-less Instagram pictures and videos downloader.
A zero-copy file-like wrapper for Python byte buffers, inspired by Rust's std::io::Cursor.
A Jinja2 template loader using PyFilesystem2.
A toy compiler that produces Kappa code from Counter Machine instructions.
Fast hierarchical agglomerative clustering in Rust.
A PPSSPP texture pack for La Pucelle Ragnarok (english patched)
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
An experimental patch with fixed-point arithmetic support for Lua 5.3