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drroe avatar drroe commented on August 17, 2024

Looking at cpptraj's code, TrajinList need to be tagged with 'ENSEMBLE' to get correct result.

No, ensemble is only active when ensemble commands have been issued. In cpptraj trajin means you will be processing one frame at a time and ensemble means you will be processing multiple frames at a time. They have their own functions in CpptrajState, RunNormal() and RunEnsemble() respectively.

Since ProcessInput() calls Dispatch() (Command.cpp, line 295) and in fact the former is just a wrapper around the latter that gets and formats input from a file/STDIN, I really can't say what might be going wrong without seeing an example of your code.

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hainm avatar hainm commented on August 17, 2024

I really can't say what might be going wrong without seeing an example of your code.

I will look further.

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hainm avatar hainm commented on August 17, 2024

just check and this is due to text string stuff in pytraj. close now.

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