ammodramus Goto Github PK
Name: Peter Wilton
Type: User
Bio: Computational biologist, population geneticist. Ammodramus, from ammos (άμμος) "sand", drameas (δρομέας) "runner", genus of American grassland sparrows.
Blog: ammodramus.github.io
Name: Peter Wilton
Type: User
Bio: Computational biologist, population geneticist. Ammodramus, from ammos (άμμος) "sand", drameas (δρομέας) "runner", genus of American grassland sparrows.
Blog: ammodramus.github.io
A simple UCLUST-like clustering algorithm for pre-aligned sequences with built in recentering
Program for analysing NGS data.
Simulating coalescence through population pedigrees
(fork with minor changes to output) discoal is a coalescent simulation program capable of simulating model with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples. This is a minor fork that changes the output slightly.
Empirical Bayes somatic variant calling
analysis of mtDNA heteroplasmy in hair samples
A program to calculate exact sampling probabilities under the infinite sites mutation model in one or two demes
Jupyter meets Vim. Vimmer will fall in love.
Fast and minimal PLINK file processing with numba
Infer the dynamics of mitochondrial heteroplasmy during different life stages using population genetics and phylogenetics
NCBI taxonomy tree in-memory mapping
Analysis scripts and notebooks accompanying a paper on mitochondrial heteroplasmy in humans
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
Introduction to (base) R for biologists
triploid SMC inference method
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.