analogiks Goto Github PK

aegis

MHC-II presentation predictor

aioc

Ham Radio All-in-one-Cable

augraphy

Augmentation pipeline for rendering synthetic paper printing, faxing, scanning and copy machine processes

bedtools2

bedtools - the swiss army knife for genome arithmetic

bern2

BERN2: an advanced neural biomedical namedentity recognition and normalization tool

bigmhc

BigMHC is a deep learning tool for predicting MHC-I (neo)epitope presentation and immunogenicity

bio-transformers

bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.

biopython

Official git repository for Biopython (originally converted from CVS)

bowtie

An ultrafast memory-efficient short read aligner

cape

dataprofiler

What's in your data? Extract schema, statistics and entities from datasets

deberta

The implementation of DeBERTa

deepdoctection

A Repo For Document AI

deephlapan

A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides and the potential immunogenicity of pMHC

deepimmuno

Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity

deeptcr

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dont-hold-your-breath

Breathing analysis with Polar H10 Heart Rate Monitor

ecco

Visualize and explore NLP language models. Ecco creates interactive visualizations directly in Jupyter notebooks explaining the behavior of Transformer-based language models (like GPT2).

emacs-python-black

Emacs package to reformat Python using black-macchiato

ente

Fully open source, End to End Encrypted alternative to Google Photos and Apple Photos

epitopeprediction

A bioinformatics best-practice analysis pipeline for epitope prediction and annotation

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

fabind

FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)

ffq

A tool to find sequencing data and metadata from public databases.

genesignet

gget

gget enables efficient querying of genomic databases, such as Ensembl, UniProt, NCBI, directly into a Python or terminal programming environment. It was designed to support genomic data analysis.

hisat2

Graph-based alignment (Hierarchical Graph FM index)

hosts

Consolidating and extending hosts files from several well-curated sources. You can optionally pick extensions to block pornography, social media, and other categories.

labelmm

The next Generation of Annotation Tools