andrewparkermorgan Goto Github PK

andrewparkermorgan.github.io

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argyle

An R package for import, QC and analysis of Illumina Infinium genotyping arrays

cc-g2f1

supporting scripts for manuscript Liu, Morgan et al. (2014) High-resolution sex-specific linkage maps of the mouse reveal polarized distribution of crossovers in male germline. Genetics. doi:10.1534/genetics.114.161653

genodb

R interface to UNC Systems Genetics genotype databases

haplotools

hmmseq

lapels

Automatically exported from code.google.com/p/lapels

microsimr

microsimr

mouse_crossover_interference

Code supporting analysis of crossover interference in F1 male mice

mouse_pseudoautosomal_region

Code and supporting files for study of mouse pseudoautosomal region.

mouser

Colour schemes and constants related to mouse genetics

mspy

Small Python library for parsing output from Hudson's MS

multiparental

Utilities for exploring, visualising and analysing genotype and haplotype data from multiparental populations

popcorn

r2d2-selfish-sweep

rplasmodium

sci

sfspy

sfsr

R package for analysing site frequency spectra (SFS)

snoop

Tools for exploration of next-generation sequencing data based on the multi-string BWT

tximport

Import and summarize transcript-level estimates for gene-level analysis

util

Miscellaneous uility functions from the FPMdV lab.

vqtl

methods for mapping variance-controlling loci (vQTL) in experimental crosses, compatible with R/qtl

wild_mouse_genetic_survey