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andy-captain's Projects

consensuscruncher icon consensuscruncher

ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.

edsbreaker icon edsbreaker

Automated parsing and data retrieval from .eds files generated by Applied Biosystems qPCR instruments

manta icon manta

Structural variant and indel caller for mapped sequencing data

pdfrw-overlay-rect icon pdfrw-overlay-rect

Python script to overlay a blank rectangular box to an existing PDF document on every page

stepone icon stepone

A Python class and several methods for handling the files output by the Applied Biosystems StepOne and StepOnePlus thermocyclers

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