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About me 😄

I am currently a Postdoc Scientist and inaugural NHMRC Investigator Fellow in Powell Lab at the Garvan Institute of Medical Research, Sydney, Australia. My current research is focused on developing new computational methods to understand the genetic control of gene expression variability at the single-cell level. I am also leading the multi-omics pillar in TenK10K cohort which aim to infer novel gene regulatory networks by integrating single-cell multi-omics data at population-scale.

For more about my research and background, please see my personal website

Angli Xue's Projects

awesome-single-cell icon awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

epurate icon epurate

A clean R Markdown template for your reports

estimate-the-dispersion icon estimate-the-dispersion

Explore the minimum number of variables for robust estimation of dispersion parameter in negative binomial distribution.

ldsc icon ldsc

LD Score Regression (LDSC)

mr_sub icon mr_sub

This is the analysis code repository for Mendelian Randomisation (MR) study between substance use behaviors (SUB) and common diseases

peer_factors icon peer_factors

Contains code pipeline to generate PEER factors from pseudo-bulk data and perform eQTL association analysis

qvalue icon qvalue

R package to estimate q-values and false discovery rate quantities.

run_analysis.r icon run_analysis.r

This is the script for Getting and Cleaning Data Course Project

seurat icon seurat

R toolkit for single cell genomics

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