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My name is Maciek & I'm a passionate bioinformatician: 🧬➕💻
I work in the field of computational cancer research.
I enjoy scientific software engineering and I care about high quality code as well as FAIR and reproducible reseach.
I put out more personal details @ my professional website.

Maciek Bąk's Projects

angry-droid icon angry-droid

Tutorial on how to turn your Android smartphone into a platform for scientific computational simulations. 📱

angry-moran-simulator icon angry-moran-simulator

A general game-theoretical framework to carry out scientific simulations of populations' evolution according to the Moran model 🧮

angry-runner icon angry-runner

Docker image recipe for a self-hosted GitHub Actions runner

bindz-rbp icon bindz-rbp

RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.

efcomp icon efcomp

Advanced methods for efficient scientific computing in Python/R/C++

hypercomplex icon hypercomplex

Abstract & fast header-only C++ template library for lattice-based cryptosystems in high-dimensional algebras

mapp icon mapp

🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.

prezto icon prezto

The configuration framework for Zsh

snakemake_fastqc icon snakemake_fastqc

A small snakemake pipeline to perform quality analysis of RNA-Seq data with FastQC.

snakemake_qdgedtu icon snakemake_qdgedtu

RNA-Seq data analysis: Quantification, Differential Gene Expression, Differential Transcripts Usage

snakemake_suppa2 icon snakemake_suppa2

A snakemake workflow to perform Alternative Splicing analysis from RNA-Seq with SUPPA2.

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