Related Issues (20)
- Effective population size too small
- Make nP and stationary shared between perchr objects HOT 2
- Test for larger chromesome
- Allow for calculation of point llh based on psmc input parameters HOT 1
- add MM for command line and time HOT 1
- allow optimization to finish after n function calls.
- Check allocation is done at beginning HOT 1
- reuse hmm when -nthreads 1
- add threading to hest, add parsing of tole in hest
- check that all files required exists when launching the program
- fix default values of rho and max_t
- Output not clear HOT 2
- Error: -> Problem opening file: '-dospline' HOT 2
- Install issues (and fixes) for master branch and recent htslib
- allow for calculation of llh for predefined parameters
- collapse regions with same pop size
- Hard-coded parameters (rho and theta) HOT 1
- check program for one state
- check -smartsize
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