annaquaglieri16 Goto Github PK

annaweb

Personal website

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

biocasia---r-ladies-an-update-on-the-local-and-wider-picture

Invited talk at BiocAsia 2018

biodemo

Material for Bioinformatics software workshop

brainstemm

Mentoring experience with high schools girls from country Victoria: data and code for brainSTEMM project + WAFL data from R-Forwards

combinebioc2017

covid-19-italia

cv

My Public CV

dvc-test

earo.me

Source files for earo.me

fixed-or-random

Some simulations and example about using fixed or random effects in unbalanced/confounded designs

follow-me-introduction-to-social-media-analysis-in-r

Material used for the 'Follow me' tutorial at useR! 2018 in Brisbane

get-your-variants-together-

Slides and example from May 2019 Bioinformatics seminar

lineplots

Now this package is varikondo - see https://github.com/annaquaglieri16/varikondo

melbourne-twitter-workshop

How to download and analyse Twitter data in R - Example using #rupauldragrace tweets

miltonmyfriend

motivational-study

nous-student

posters-and-talks

Talks and poster given at conferences (while I am waiting to have some time to build my personal website!)

rladiesmelbinc_2019

rna-seq-and-adapters--star-vs-subjunc

Short analysis about aligning RNA-Seq with adapter contamination using STAR and Subjunc

rna-seq-variant-calling

Functions to call variant in RNA-Seq with Mutect2, Varscan, and Vardict

rna-variants-book

Chapters of the book summarising the pipeline that I use to call variants from RNA sequencing samples

royaltweets

Tweets downloaded across three months prior to Meghan's and Harry's wedding and used for the useR! tutorial on social network analysis

ruv-user2018

samplepower

R package including functions used to process RNA variants and compute the power with respect to a truth set. Used for paper 'Finding a suitable library size to call variants with RNA-Seq'

shiny-clone

Shiny app to explore mutations across a cohort of patients using data stored in data frames

ssavic-2021

Slides for the Industry showcase SSA VIC 2021 event https://www.statsoc.org.au/event-4479655

ssavic-2022

Slides for the early career panel discussion event https://statsoc.org.au/event-4945724

starmie

starmie: plotting and inference for population structure models :star2: