annecarpenter Goto Github PK
Name: Anne Carpenter
Type: User
Company: Broad Institute of Harvard and MIT
Location: Cambridge, MA
Anne Carpenter's Projects
application
A web application for classifying objects
awesome-cytodata
A curated list of awesome cytodata resources
batchprofiler
cellpainting-gallery
Cell Painting Gallery
cellprofiler
An open-source application for measuring phenotypes
cellprofiler-analyst
Software for exploring and analyzing large, high-dimensional image-derived data.
cellprofiler-build
Infrastructure for continuous integration and automatic builds of CellProfiler internally at the Broad institute
cellprofiler-plugins
This is a temporary home for CellProfiler modules that are either experimental or whose methods may not meet the standards of those in CellProfiler proper.
cellprofiler-rpm
cellprofiler.github.io
http://www.cellprofiler.org
cellprofiler1.0
CellProfiler 1.0 (Matlab-based)
cellstar
CellStar
centrosome
An open source image processing library
cpcharm
cytominr
Library for mining patterns in perturbation data
debian
deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
docker
eustace
Web application
examples
Example CellProfiler pipelines.
imaging-flow-cytometry
maging flow cytometry combines the high-throughput capabilities of conventional flow cytometry with single-cell imaging. CellProfiler can be used to analyze the resulting images from imaging flow cytometry, whether brightfield, darkfield, or fluorescence.
jenkins
knime-bridge
ZMQ connection between CellProfiler and Knime
metabolism
open-data-registry
A registry of publicly available datasets on AWS
projects
a list of all projects
prokaryote
CellProfiler’s Java dependencies
python-bioformats
Read and write life sciences file formats
python-imagej
python-javabridge
Python wrapper for the Java Native Interface
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