Comments (2)
Hi SkBlaz,
Here is a direct link to the dataset PMIDs: https://ii.nlm.nih.gov/DataSets/2013_MTI_ML_DataSet.tar
You will need to pull the titles and abstracts for each PMID. For the validation split, I think we simply removed 5000 documents from the training set at random.
If you are interested in MeSH indexing, I recommend taking a look at the BioASQ competition. There are more than 27k MeSH terms, not just 29. The paper you are referring to was a proof of concept on a small number of MeSH terms. I have linked to our paper using all MeSH terms below, as well as the BioASQ competition website:
http://participants-area.bioasq.org/general_information/Task6a/
https://ieeexplore.ieee.org/abstract/document/7349667
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Thank you very much! This is exactly what I was looking for.
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