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cnmf_e

Constrained Nonnegative Matrix Factorization for microEndoscopic data

fastplotlib

Next-gen fast plotting library running on WGPU using the pygfx rendering engine

ffn

Flood-Filling Networks for instance segmentation in 3d volumes.

funimag

Compression, denoising and demixing of functional imaging recordings

jnormcorre

Jax implementation of normcorre

localaggregation

Tensorflow implementation for "Local Aggregation for Unsupervised Learning of Visual Embeddings"

localmd

Accelerated local matrix decomposition for calcium imaging data

masknmf

Method for separating overlapping calcium imaging signals

masknmf_full_pipeline

End to end pipeline for maskNMF, from motion correction to demixing

napari-masknmf

napari plugin for viewing and analyzing neuroimaging data (calcium, voltage, etc.)

neurocaas

IaC codebase for the NeuroCAAS Platform

neurocaas_contrib

Repo to help develop on AMIs associated with NeuroCAAS

noise2self

A framework for blind denoising with self-supervision.

pytorch_sparse

PyTorch Extension Library of Optimized Autograd Sparse Matrix Operations

rlocalnmf

New localNMF implementation with advanced background models and initialization options

test