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2022-pths-rna-seq-analysis

RNA-Seq analysis for "Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content"

anvio

An analysis and visualization platform for 'omics data

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics-snakemake-pipelines

Collection of Snakemake pipeline for commin bioinformatics tasks

cibuildwheel

🎡 Build Python wheels on CI with minimal configuration.

clust

Automatic and optimised consensus clustering of one or more heterogeneous datasets

cobra.github.io

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

conterminator

Detection of incorrectly labeled sequences across kingdoms

cortical-organoids-reanalysis

Reanalysis of the "cortical.organoids" dataset from "Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development"

dbmap

A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.

docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

enrichm

Toolbox for comparative genomics of MAGs

furo

A clean customizable documentation theme for Sphinx

galah

More scalable dereplication for metagenome assembled genomes

genbank-submission-cleaner

Remove contaminants flagged during GenBank's submission process

genomad

geNomad: Identification of mobile genetic elements

genomad-annotate-module-snakemake

A snakemake workflow implementing the genomad annotate module steps

gradient-centralization-tensorflow

Instantly improve your training performance of TensorFlow models with just 2 lines of code!

hmmsearch-parser-dbcan

hmmsearch parser for the dbCAN database

homebrew-core

🍻 Default formulae for the missing package manager for macOS

hpc_pfam_search

pfam_scan meets hmmsearch.

icons

Named, vector icons for elementary OS

ictv-mmseqs2-protein-database

insilicoseq

:rocket: A sequencing simulator

instrain

Bioinformatics program inStrain

kcounter

A simple package for counting DNA k-mers in Python. Written in Rust.

lncrnanet

localcolabfold

ColabFold on your local PC

lra-igloo

magpurify

Improvement of metagenome-assembled genomes