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bioconda-recipes

Conda recipes for the bioconda channel.

competitive-pwm-scorer

cramtools

Format specification and java implementation for next-gen data.

docker-alignment_helper-cwl

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

genome

getdata

Course project for Getting and Cleaning Data

graph_genotyper

Experiment with scala and vg protobuf messages

miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

one-offs

pipeline-standardization

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

rocker

R configurations for Docker

rvtests

Rare variant test software for next generation sequencing data

seqwish

alignment to variation graph inducer

sv-pipeline

Pipeline for structural variation detection in cohorts

svtools

Tools for processing and analyzing structural variants.

svtyper

Bayesian genotyper for structural variants

svviz

Read visualizer for structural variants

testtracker

thehumanpangenome

Creation and Toolsets for a Long-Read Trio Based Human Pangenome

ur

Rich Transactional Objects for Perl

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

vg

tools for working with variation graphs

wugc-hudson

Washington University Genome Center Hudson testing suite and deploy scripts

yaps2

Yet Another Pipeline System 2 (YAPS2)