aquaskyline Goto Github PK

16gt

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

aquaskyline.github.io

bioconda-recipes

Conda recipes for the bioconda channel.

blockchain-application-for-biomedical-data

clair

clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

lrsim

10x Genomics Reads Simulator

mica-aligner

MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.

skyhawk

An Artificial Neural Network-based discriminator for validating clinically significant genomic variants

soap3-dp

To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.

soapcoverage

soapdenovo-trans

SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.

soapdenovo2

Next generation sequencing reads de novo assembler.

vcf2diploid

personal genome constructor

wannaaln