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Mrc010 avatar Mrc010 commented on September 26, 2024

Okay, the following modification worked for me...

original code:

                   # Section Save jpg with outlines
                   path_to_multiple_outline = os.path.join(str(gvars['path_multiple_image_directory']),original_name + "_Erosion_" +str(self.pix_erosion_mult)+ "px_" + "Outlines.jpg")
                   outlines_image = original_image.flatten()
                   IJ.saveAs(outlines_image, "JPG", path_to_multiple_outline)

modified code:

                   # Section Save jpg with outlines
                   path_to_multiple_outline = os.path.join(str(gvars['path_multiple_image_directory']),original_name + "_Erosion_" +str(self.pix_erosion_mult)+ "px_" + "Outlines.jpg")
                   IJ.run(original_image, "Select All", "");
                   IJ.setBackgroundColor(0, 0, 0);
                   IJ.run(original_image, "Clear", "slice");
                   outlines_image = original_image.flatten()
                   IJ.saveAs(outlines_image, "JPG", path_to_multiple_outline)

from labelstorois.

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