artemluzhin Goto Github PK
Name: Artem Luzhin
Type: User
Bio: Ph.D. in Molecular biology.
Location: Moscow
Artem Luzhin's Projects
alphafold
Open source code for AlphaFold.
c-tale-normalization
Code and examples for C-TALE normalization
coolpuppy
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
cooltools
The tools for your .cool's
diffexpr
Porting DESeq2 and DEXSeq into python via rpy2
gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns etc from GTF files
hicorr
HiCorr: a Hi-C data normalization pipeline
hicplotlib
lasca_pipeline
Loops And Significant Contacts Annotation pipeline (LASCA_pipeline) is a flexible tool to annotate loops and significant interactions in HiC data.
mlcourse_open
OpenDataScience Machine Learning course. Both in English and Russian
pairtools
CLI tools to process mapped Hi-C data
pepr
a peak-calling and differential analysis tool for replicated ChIP-Seq data
psychic
Code for finding putative enhancers using Hi-C data
redc_normalization
Normalization script for Red-C method
storm-microscopy-analysis
This repository contains set of functions that we used to analyze STORM images in our current study
test
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