Comments (4)
heche-psb
commented on August 16, 2024
Hi, it's not a common practice to draw Ks distribution in scatter plot. But I guess it could help if there is a density option as you mentioned.
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romseg
commented on August 16, 2024
Dear author,
Please, would it be possible for you to add these options to wgd without bokeh? or at least density option? Thank you for creating such a useful program.
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heche-psb
commented on August 16, 2024
In fact, I have implemented more sophisticated plot function in v2. You can decide the plot by adding options spair, plotkde, etc. Maybe you can give it a try.
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romseg
commented on August 16, 2024
I was not aware of the v2 version. I will give it a try. Thanks.
Rom
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Related Issues (20)
- raise the `max_pairwise` parameter HOT 1
- number of threads HOT 1
- Visualization HOT 1
- Errors when using kde & mix methods
- Hang up due to codeml and fix HOT 1
- How to adjust the abscissa of the Ks plot? HOT 2
- KeyError HOT 5
- Dotplots.svg and ks_anchors.tsv files are empty HOT 9
- Stronger evidence of WGD in one species versus another
- bokeh visualisation error HOT 2
- Singularity test failed
- Singularity error with wgd syn HOT 2
- command "wgs ksd" work error HOT 1
- WGD run error HOT 1
- The align_out folder is empty
- WARNING:root:No codeml results HOT 1
- Error running dmd HOT 1
- About input sequences
- No codeml results for GF_0000.....
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