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augur

Pipeline components for real-time phylodynamic analysis

auspice

Web app for visualizing pathogen evolution

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

betterchatgpt

An amazing UI for OpenAI's ChatGPT (Website + Windows + MacOS + Linux)

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

gatk

Official code repository for GATK versions 4 and up

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

intervar

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

ldsc

LD Score Regression (LDSC)

loftee

ncov

Nextstrain build for novel coronavirus (nCoV)

phesant

PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

phylogenetic_analysis

plink2r

Read PLINK BED/BIM/FAM files into R

python-fp-growth

An implementation of the FP-growth algorithm in pure Python.

real-time-voice-cloning

Clone a voice in 5 seconds to generate arbitrary speech in real-time

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

varken

Standalone application to aggregate data from the Plex ecosystem into InfluxDB using Grafana for a frontend

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files