asouzujoseph Goto Github PK

bioinformatics-thesis-project

This research project is based on comparative genomics and phylogenetics analysis. These codes were used to analyze genomic data and show evidence of co-evolution between Lactobacillus bacteria and bacteriophages.

bioinformatics-training-collection

A collection of resources for learning about tools and programming languages related to Bioinformatics

biostatistics

Projects on statistical concepts such as model fitting and selection, mixed / hierarchical models, longitudinal models and models for missing data.

dashboard--using-dash-plotly

This script uses Dash/Plotly library to produce an interactive dashboard for simultaneous analysis for multiple datasets.

deep_trader

This project uses reinforcement learning on stock market and agent tries to learn trading. The goal is to check if the agent can learn to read tape. The project is dedicated to hero in life great Jesse Livermore.

diagnostics_exome_reporting

Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.

docker

Hosting of Rshiny app on docker

gatk-pipeline

A shell script which implements GATK pipeline for variant calling.

github-readme-stats

:zap: Dynamically generated stats for your github readmes

icomic

GUI for variant calling pipeline

intelligent_agents

javaproject

A java project to design a road navigation system with different conditions on various types of roads. Features of object-oriented programming such as polymorphism, dynamic binding and inheritance were used in this project. Equally, defensive, total and nominal programming techniques were extensively used in this project

machine-learning-with-python

Projects using optimal machine learning algorithms to solve problems

metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December

ml-course-vib-2021

multivariate-statistical-analysis

This is a project on multivariate analysis of soil samples in Brazil

priorr

PriorR

proclasp

Classification of prokaryotic genomes on the species level

projects

:page_with_curl: A list of practical projects that anyone can solve in any programming language.

shinyauthr

R package with shiny authentication modules

snpsvm

A support vector machine for calling variants from next-gen sequencing data

statistical_learning-with-r

Projects on statistical learning concepts such as linear regression, classification techniques(logistic regression, LDA and KNN), resampling methods, linear model selection, lasso and ridge regression, GAM, decision trees, SVM, PCA and clustering techniques

support-vector-machines

The Least Squares SVM (LSSVM) MATLAB toolkit was used in this project.

timeseries

This script combines multiple datasets into a dictionary of data frames and produces time series subplots of any set of chosen variables whilst making use of pandas resampling and rolling functions.

univariate-statistical-data-analysis

Projects on the following concepts: correlation analysis, hypothesis testing, linear regression, model diagnostics and variable selection, logistic regression and ANOVA

variant_calling_pipeline

Comprehensive SNP/indel/structural variant calling pipeline for model organisms

variantcallingfjd

wes_shinydiscover

A Shiny interface to filter and identify variants of interest from whole exome data

workshop-bash_scripting_and_hpc_job_scheduler

A workshop to get you started with automating your data analysis work in a High Performance Computing environment

wumpus