atarashansky Goto Github PK

anndata

Annotated data.

atarashansky.github.io

celloracle

This is the alpha version of the CellOracle package

diffusers

🤗 Diffusers: State-of-the-art diffusion models for image and audio generation in PyTorch

dreambooth-stable-diffusion

Implementation of Dreambooth (https://arxiv.org/abs/2208.12242) with Stable Diffusion

dropletutils

Clone of the Bioconductor repository for the DropletUtils package.

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

holoviews

With Holoviews, your data visualizes itself.

lightgoea

A light-weight python function for performing GO term enrichment analysis

louvain_surprise

magic

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

markdown_readme

Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.

mygene-api

A simple API wrapper for the MyGene.info API.

networkd3

D3 JavaScript Network Graphs from R

notebooks

RAPIDS Sample Notebooks

pancake-frontend

:pancakes: Pancake main features (farms, pools, IFO, lottery, profiles)

pancake-swap-interface-v1

:pancakes: Pancake trading interface V1

pancakeswap-sdk-v2

pcasparse

A function that can run PCA on sparse inputs using LinearOperators to perform implicit mean centering prior to SVD.

samap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

sankeyd3

D3 Sankey Network Graphs from R

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scikit-learn

scikit-learn: machine learning in Python

scrna-parameter-estimation

Direct estimation of mean and covariance from single cell RNA seq experiments

sctransformpy

A python port of the R package SCTransform:

scvi-tools

Deep probabilistic analysis of single-cell omics data with joint cell and gene embeddings

self-assembling-manifold

The Self-Assembling-Manifold (SAM) algorithm.

simplegoodturing

Python implementation of Gale and Sampson's (1995/2001) "Simple Good Turing" algorithm.

spatial_evolution

2D evolutionary spatial simulation of cells

stable-diffusion