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2015-siggraph-convolutional-ot

J. Solomon, F. de Goes, G. Peyré, M. Cuturi, A. Butscher, A. Nguyen, T. Du, L. Guibas. Convolutional Wasserstein Distances: Efficient Optimal Transportation on Geometric Domains. ACM Transactions on Graphics (Proc. SIGGRAPH 2015), 34(4), pp. 66:1–66:11, 2015

action-matching

arxiv-sanity-preserver

Web interface for browsing, search and filtering recent arxiv submissions

atong01.github.io

A Bootstrap 4 resume/CV theme created by Start Bootstrap

automaticsummarization

Automatic Summarization for Python NLTK

balabanlineintersection

Webpage Source for Description of the Balaban Line Intersection Algorithm

beeline

BEELINE: evaluation of algorithms for gene regulatory network inference

bhgp_2022

boolode

Git Repo for simulating Boolean Models

capsnet-tensorflow

A Tensorflow implementation of CapsNet(Capsules Net) in Hinton's paper Dynamic Routing Between Capsules

cell-dynamics-pipeline

cellxgene

An interactive explorer for single-cell transcriptomics data

chroma

A generative model for programmable protein design

cmc

Contrastive Multiview Coding (self-supervised learning from multiple sensors/views/modalities)

coinshuffle

Coin Shuffle implementation

comp116-atong

COMP 116 Fall 2014 Classwork

comp135-atong

Comp 135 Spring 2015 Classwork

conditional-flow-matching

TorchCFM: a Conditional Flow Matching library

config

Contains Alex Tong's Config Files

cygnal

Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.

data-xyz

dibs

Joint Bayesian inference of graph and parameters of general Bayes nets

diffusion_schrodinger_bridge

PyTorch Implementation of DSB for Score Based Generative Modeling. Experiments managed using Hydra.

docker

env

Docker environments

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

fab-torch

Flow Annealed Importance Sampling Bootstrap (FAB). ICLR 2023.

fast-mutex

Code Looking at a Fast Randomized Distributed Low Space Mutex Algorithm

fcsparser

a python parser for reading fcs files supprorting fcs 2.0, 3.0, 3.1

ffjord

code for "FFJORD: Free-form Continuous Dynamics for Scalable Reversible Generative Models".