auranic Goto Github PK

acsnminer

R package for enrichment/depletion analysis of ACSN maps and gmt files

auranic.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

binom

biodica

"Independent Component Analysis of BIg Omics Data"

broadcellline_scrnaseq_analysis

cd2sbgnml

Translation between CellDesigner-flavoured SBML and SBGN-ML

cellcycletrajectory_segmentmodel

clintrajan

Finding trajectories, bifurcations and quantifying pseudotime in large clinical datasets

dann

Keras implementation of Domain-Adversarial Training of Neural Networks (DANN)

dann_pytorch_test

deconica

Deconvolution of transcriptome through Immune Component Analysis

dedal

DeDaL (Data-Driven network Layout) is a Cytoscape 3.0 [1] app developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris).

elastic-principal-graphs

Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method

elmap

Elastic map

elpigraph.p

Python implementation of the Elastic Principal Graph algorithm with multi-cpu and gpu support

elpigraph.r

An R package to construct Elastic Principal Graphs

ewingsinglecelldataanalysis

Code accompanying the manuscript "Transcriptional programs define intratumoral heterogeneity of Ewing sarcoma at single cell resolution"

exact-stoch-log-mod

ExaStoLog: a MATLAB toolbox for EXAct calculation of STOchastic LOGical models

fisherseparabilityanalysis

Data point cloud separability analysis based on linear Fisher discriminants

getools

Utilities for analysing gene expression data

hack

Hierarchical approach to Stabilised Independent Component Analysis

intrinsic-transcriptome-dimension

Computational methodology for estimating the intrinsic dimensionality of transcriptomic data, including single cell RNASeq data

jnavicell

Java interface to NaviCell molecular maps

lab-agile-planning

his repository contains the lab for agile planning

lizardbrain

LizardBrain - structure of a data point cloud which is locally simple, globally complex

logical_modelling_pipeline

Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris)

maboss-env-2.0

MaBoSS is a C++ software for simulating continuous/discrete time Markov processes, applied on a Boolean network.

navicell

A web tool for exploring large maps of molecular interactions

navicom

Python package for easy visualisation of high-throughput dataset on NaviCell maps.

navicom_portal

NaviCom web portal for communication between cBioPortal and NaviCell