ayooluwab Goto Github PK

amr

amr_finder

bacass

Simple bacterial assembly and annotation pipeline

covid-19-signal-nml

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

easy_circos

easy_circos is a simple conda package that aims on rapidly and easily creating minimal circos configurations templates based on input data.

microbiome16s_pipeline

Reproducible Scalable Pipeline For Amplicon-based Metagenomics (RSP4ABM) is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

mummer2circos

Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

nf-centrifuge-build

Nextflow workflow to build a Centrifuge index

nf-iav-illumina

Influenza genome analysis Nextflow workflow

nf-virontus

Oxford Nanopore reference mapping, taxonomic classification, de novo assembly workflow primarily for viral sequence data

plannotate

Webserver and command line tool for annotating engineered plasmids

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

pycircos

python Circos

quast

Genome assembly evaluation tool

shovill

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

snvphyl_nextflow

Nextflow version of SNVPhyl

tbprofiler-nf

Nextflow Wrapper for TBProfiler

trycycler

A tool for generating consensus long-read assemblies for bacterial genomes

unicycler

hybrid assembly pipeline for bacterial genomes

viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

wf-clone-validation

wgscovplot

The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth information, variants and DNA Gene features