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community_detection_covid-19

Script to reproduce results from Elliott et al. Symptom reporting in over 1 million people: community detection of COVID-19 (2021) doi: https://doi.org/10.1101/2021.02.10.21251480

conda_r_skeleton_helper

Cleaning up Conda r-packages

consensus_clustering

drat

Sample drat repository for easy forking and bootstrapping

epigenetic_mechanisms_lung_cancer

Scripts to reproduce the analyses in Petrovic, Bodinier et al. "Epigenetic mechanisms of lung carcinogenesis involve differentially methylated CpG sites beyond those associated with smoking".

fake

R package fake (Flexible Data Simulation Using The Multivariate Normal Distribution).

rcosa

Clustering objects on subsets of attributes

sharp

R package sharp (Stability-enHanced Approaches using Resampling Procedures).

stability_selection

Scripts to reproduce results from Bodinier et al. "Automated calibration for stability selection in penalised regression and graphical models" (2021) https://arxiv.org/abs/2106.02521

thesis

Scripts to reproduce the analyses of my PhD thesis "A stability framework for variable selection, graphical modelling and clustering: Applications in lung cancer research".

variable_ranking_cvd

Scripts to reproduce analyses from Elliott et al. "Improving cardiovascular risk prediction beyond pooled cohort equations: a prospective cohort of 304,356 participants" (submitted)