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aahash_paper

aaHash repo for manuscript

abyss

:microscope: Assemble large genomes using short reads

abyss-2.0-giab

:baby_bottle: Assemble the Genome in a Bottle sequencing data

abyss-build-env

abyss-connector-paper

ABySS-Connector: Connecting Paired Sequences with a Bloom Filter de Bruijn Graph

abyss-explorer

Visualize genome sequence assemblies

abyss-organelle

Utilities to assemble an organelle genome using ABySS

amnatate

Draft genome completeness assessment using hash based approach

ampd-up

De novo antimicrobial peptide sequence generation with recurrent neural networks

amplify

Attentive deep learning model for antimicrobial peptide prediction

arcs

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

arks

ARCHIVED 🌈Alignment-free scaffolding of genome assemblies with 10x Genomics Chromium reads. ARCS/ARKS projects have been consolidated: https://github.com/bcgsc/arcs

bcgsc.github.io

biobloom

Create Bloom filters for a given reference and then use it to categorize sequences

bloom-identity-est

These scripts provide a fast, memory-efficient method for estimating the percent sequence identity between two genomes using a probabilistic data structure called a Bloom filter

btl

:microscope: Bioinformatics Technology Lab, Genome Sciences Centre

btl_bloomfilter

The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.

btllib

Bioinformatics Technology Lab common code library

canadian_biogenome_project

This repo contains the pipeline used by the Canadian Biogenome Project (http://earthbiogenome.ca) to generate assemblies

chopstitch

Finding putative exons and constructing splicegraphs using Trans-ABySS contigs

chopstitch_paper

Supplementary material for ChopStitch paper

chromeqc

ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads

dida

DIDA Project

emu_rnaseq

:bird: Seasonal and sex-dependent gene expression in emu fat tissues

gappredict

Character-level language model for draft genome assembly gap-filling

ggcli

command line interface for ggplot

goldpolish

GoldPolish (aka GoldRush-Edit) is a long read sequence polisher used in the GoldRush assembler

goldrush

Linear-time de novo Long Read Assembler

graphviz-utils

GraphViz scripts

gum

GUM: Group, User Manager for LDAP