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🔭 About Me:

I am currently a Senior Full-Stack Software Developer at Aristotle Cloud Services working with Django, Python and Vue. I am also undertaking my honours year at the Australian National University in the Williams lab looking at engineering resistance to disease in plants using new technologies.

I am also working on various bioinformatic projects! I am interested in evolution, mutation, cell regulation and protein synthesis. I like transcriptomics and spatial-omics and would love to work in split bioinformatic and wet-lab focused biology. Recently, I have begun looking into protein structure prediction, specifically, de novo prediction.

I have a high level of fluency in Python, R, Bash and Javascript, and I am currently learning Rust. I am open to collaborate on any bioinformatics-related projects.

I also currently study a Bachelor of Laws and I am excited about developing methods, using machine learning or otherwise to augment and assist the legal process.

📫 [email protected]

Ben Silke's Projects

biol3209 icon biol3209

This repo contains the code for the undertaking of the biol3209 subject.

delucs icon delucs

This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.

metagenemark-2 icon metagenemark-2

The MetaGeneMark-2 source code, data, and experiments to reproduce published results.

openfold icon openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

treecluster icon treecluster

Efficient phylogenetic clustering of viral sequences

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