Comments (5)
Hi Pierre,
after 6 months of procrastination, I fixed this. I don't think I can really detect wrong taxon names from ParGenes (raxml-ng would have to do it), but I replaced the very obscure error message with something less confusing ;-)
from pargenes.
Hi,
I tried every possibility of taxon labeling, but the same error appears.
[Error] <type 'exceptions.ZeroDivisionError'> integer division or modulo by zero
Writing report file in /home/lucaslima/Documentos/Output8/report.txt
When reporting the issue, please always send us this file.
May you please help me?
Thanks in advance.
The report.txt follows
from pargenes.
Hi Lucas,
Thanks for your report!
The report file says that ParGenes cannot find a file that should be installed by the installation script (install.sh
in the top directory). Did you run this script before running ParGenes? If yes, could you please run it again and send me its output?
I will add a more explicit error message for this kind of issue :-)
Benoit
from pargenes.
Hi Benoit,
Thanks a lot for you help. You were right. I had a unnoted problem with the install.sh.
When I execute it the follow error apears:
Could NOT find BISON (missing: BISON_EXECUTABLE)
-- Could NOT find FLEX (missing: FLEX_EXECUTABLE)
CMake Error at libs/pll-modules/libs/libpll/src/CMakeLists.txt:19 (BISON_TARGET):
Unknown CMake command "BISON_TARGET".
-- Configuring incomplete, errors occurred!
See also "/home/lucaslima/ParGenes/raxml-ng/build/CMakeFiles/CMakeOutput.log".
See also "/home/lucaslima/ParGenes/raxml-ng/build/CMakeFiles/CMakeError.log".
The log files in attachment.
Cheers,
CMakeError.log
CMakeOutput.log
from pargenes.
It looks like you have some missing dependencies (flex and bison). See raxml-ng instructions to install them: https://github.com/amkozlov/raxml-ng#installation-instructions
If it still does not work, the best would be to directly ask in our raxml-ng google group: https://groups.google.com/forum/#!forum/raxml
Cheers,
Benoit
from pargenes.
Related Issues (20)
- Cloning astral is very long
- cores? HOT 2
- Implement some raxml default behaviors
- ModelTest step failing with many cores (unspecified error) HOT 5
- Check the seed behavior
- Error w/ MPIScheduler Build HOT 3
- make -j 40 HOT 3
- Error parsing the cmd HOT 4
- Tags for newer versions HOT 4
- Conda package for ParGenes HOT 18
- Not reading MPI HOT 5
- Feature request: Add `--version` option HOT 2
- error: thread-local storage is not supported for the current target HOT 2
- Not an issue just a question/request HOT 3
- Feature suggestion: add usage of astral-mp HOT 4
- ASTRAL Test Failure HOT 5
- Optimizing branch length with fixed tree topology HOT 2
- ParGenes run failed HOT 4
- export.py is missing HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from pargenes.