bernardo-de-almeida Goto Github PK

basepairmodels

deeplift

Public facing deeplift repo

deepstarr

Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Drosophila melanogaster S2 cells

deepstarr_embryo

Deep learning models to predict enhancers in different Drosophila embryo tissues

enformer_predictions

Code to use the Enformer model to make predictions on new sequences

models

Model zoo for genomics

motif-clustering

Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy

neural_machine_translation

Sequence-to-sequence Transformer model to translate Portuguese into English

neural_network_dna_demo

Jupyter Notebook to demonstrate the use of Neural Networks for Transcription Factor Binding Site Prediction

pancancer_centrosomeamplification

Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome

sentiment_classification_bert

Language model for sentiment analysis

tfmodisco

TF MOtif Discovery from Importance SCOres

variant_starrseq

Scripts to reproduce the results of the random variant and oligo STARR-seq paper