bernt-matthias Goto Github PK

2023-rrrmt-chapter

actions-uid-gid

Test repository for showing uid and gid in GitHub Actions virtual environment

ampvis2

Tools for visualising amplicon data

ansible

Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy and maintain. Automate everything from code deployment to network configuration to cloud management, in a language that approaches plain English, using SSH, with no agents to install on remote systems. https://docs.ansible.com.

ansible-galaxy-tools

An Ansible role for automated installation of tools from a Tool Shed into Galaxy.

argparse2tool

transparently build CWL and Galaxy XML tool definitions for any script that uses argparse

asaim-galaxytools

autoupdate

bash_kernel

A bash kernel for IPython

bdbag-feedstock

A conda-smithy repository for bdbag.

bioblend

A Python library for interacting with the Galaxy API

bioconda-recipes

Conda recipes for the bioconda channel.

biocondacli

Tools for automating the use of the aCLImatise parser over large datasets

biom-format

The Biological Observation Matrix (BIOM) Format Project

blastdl

Downloads NCBI's BLAST databases.

bvalot-galaxytools

Galaxy repository

cargo-port

cache packages permanently

cfm-galaxy

checkm

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

clihelpparser

Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)

cobra-feedstock

A conda-smithy repository for cobra.

ctdconverter

Series of python scripts to convert CTD files into other formats such as Galaxy, CWL

ctdopts

Gives your command-line tools a CTD-compatible interface

ctdopts-feedstock

A conda-smithy repository for ctdopts.

curl

A Modern and Flexible Web Client for R

cutadapt

Cutadapt removes adapter sequences from sequencing reads

ddocent

a bash pipeline for RAD sequencing

deepfplearn

Link molecular structures of chemicals (in form of topological fingerprints) with multiple targets

dtw-feedstock

A conda-smithy repository for dtw.

earlham-galaxytools

Galaxy tools developed at the Earlham Institute