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Bernt Popp

🔬 Human Genetics Researcher - Passionate about unraveling the mysteries of genetics and contributing to advancements in medical science.

🌐 Quick Links

📖 Background

I was born in a small Romanian town. My mother is a Transylvanian Saxon, and my father is Romanian. Nature, genetics, and the evolution of DNA, a thread that connects all life on Earth, have always captivated me. My interest in technology and computers began in the late 1990s with a family-owned computer, where I learned to code in Basic. During my medical studies, I discovered the field of human genetics, which provided a way to combine these interests. My journey in this field has been marked by pivotal moments, like securing my first DFG project, being honored with the "GfH-Promotionspreis" 2017, and the SYNLAB-award at EuroDysmorpho 2019, each milestone propelling me further into the exploration of genetic landscapes and bioinformatics.

💼 Professional Experience

  • Currently working at BIH Charité Berlin and LaborBerlin, focusing on rare diseases of neuronal development, rare tumors, and kidney diseases.
  • Senior Physician at Charité – Universitätsmedizin Berlin, Translational Research Area - Research Group "Hypertension and Molecular Biology of Endocrine Tumors" since 07/2022.
  • Previously Senior Physician and Head of the Genetics Outpatient Clinic at MVZ Dresden.
  • Specialist in Human Genetics at the Institute of Human Genetics, University of Leipzig Medical Center, and Deputy Team Leader Genetic Diagnostics - Clinical Genomics.
  • DFG Rotation Position at the Human Genetics Institute of the University Hospital Leipzig, working on the project "Exome Pool-Seq and systems biology approach to identify and characterize genes and networks in neurodevelopmental disorders".
  • Previously Resident and scientific-medical assistant at the Institute of Human Genetics, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.

🌱 Other Interests

Nature, science, and technology also play a big role in my personal life. I enjoy freediving, scuba diving, being in nature and I am a passionate photographer. Most recent hobby is finding fossil shark teeth around the world.

I love traveling and experiencing new things, trying to involve in local communities, cultures and citizen science.

🐋 Favorite Animals

Favorite animals: sharks 🦈, whales 🐋, and turtles 🐢.

Whales of Moorea Photographing a baby humpback whale in Moorea, French Polynesia.

Checking of Caretta caretta hatchlings and nests on Kefalonia Checking a nest of loggerhead sea turtles (Caretta caretta) for signs of hatchlings on the island of Kefalonia in Greece.

My first Megalodon tooth in Gainsville Very happy after finding my first Megalodon tooth in Gainsville, Florida.

🏆 Achievements

  • Spearheaded SysNDD, a robust platform for analyzing gene-disease relationships in neurodevelopmental disorders (NDD).
  • Established MorbidGenes, providing a monthly updated list of diagnostically relevant genes to advance genetic diagnostics.
  • Developed HNF1B-db, a dedicated database for HNF1B variant annotations.
  • Contributed to AutoCaSc, an automated variant curation system, showcased in a recent publication in Human Mutation.
  • Involved in Kidney-Genetics, a project dedicated to understanding the genetic underpinnings of kidney diseases, with comprehensive documentation.

👨‍💻 Coding Experience

  • Languages: R, SQL, Bash, Python, JavaScript, HTML, CSS
  • Technologies: Docker, GitHub, Nextflow, SnakeMake

🎓 Academic Background

  • Dissertation Dr. med. at the Institute of Human Genetics, University Hospital Erlangen, Title: "De novo missense mutations in the NAA10 gene cause severe non-syndromic developmental delay in males and females" (summa cum laude), 11/2015 - 02/2013.
  • License as a physician after completing medical studies at the FAU Erlangen-Nuremberg, 11/2012.

📬 Contact

  • 📧 bernt.popp[at]charite.de | bernt.popp.md[at]gmail.com

Disclaimer: Any opinions expressed here are solely my own and do not reflect the views of my employer, funders, or their affiliates.

Bernt Popp's Projects

curl-ier icon curl-ier

An intuitive Node.js CLI tool for automating HTTP requests with customizable parameters and saving responses, ideal for streamlined data retrieval and API interaction.

morbidgenes icon morbidgenes

Monthly updated list of diagnostically relevant genes

screen-scout icon screen-scout

Automate the process of capturing screenshots of web pages

sysndd icon sysndd

GitHub Repository for the SysNDD database, web app and api used to curate gene disease relationships in neurodevelopmental disorders (NDD).

table-harvester icon table-harvester

Effortlessly extract data from HTML tables and convert them into structured CSV files.

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