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This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.
Repository for all of the analysis for the CCNU project
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
Implementation of the GATK copy number pipeline in CWL (ported from WDL)
Template Code for OncoPrint
An extension of the Tangent method that allows for improved normalization of the sex chromosomes.
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