Name: Benjamin M. Gyori
Type: User
Company: Northeastern University
Bio: Sysbio & AI researcher. Leading https://gyorilab.github.io. Working on knowledge assembly, modeling, human-machine collaboration, and text mining.
Twitter: benjamingyori
Location: Boston, MA, USA
Blog: https://gyorilab.github.io
Benjamin M. Gyori's Projects
Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate repository.
Repository devoted to the ASKEM TA1 Working Group Demo for Oct 2022
Bayesian model structure discrimination based on fixed cell data
Bayesian model inference and parameter estimation for biological models
Bio CorEx
Biological reasoning agents
Conda recipes for the bioconda channel.
Community curated equivalences and related mappings between named biological entities
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
collaborative assistant for biocuration
CaSQ: Celldesigner as Sbml-Qual [https://gitlab.inria.fr/soliman/casq/ mirror]
An ontology of cell types
Curation of mechanistic relations from roles in ChEBI and MeSH
A PyTorch based deep learning library for drug pair scoring.
The Curation of Neurodegeneration Supporting Ontology (CONSO)
Controlled vocabularies used in neXtProt - From SIB CALIPHO group; neXtProt project
General information about the WorldModelers repos related to reading and assembly
cupSODA is CUDA-powered coarse-grain deterministic simulator of mass-action kinetics models
Framework for assembling dynamic probabilistic models from textual evidence