Rdesignuer/ex8.3_spine_vol_change.py getting runtime error about moose-examples HOT 4 CLOSED

Checked in some fixes on zombie_gone branch. The buildNeuroMeshJunctions issue with PyBind is solved.

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Yes Zombie_gone branch buildNeuroMeshJunction issue is gone but for the same file now we get segv upon debugging at Stoich::innerInstallReaction the segv fault.

from moose-examples.

In zombie _gone branch, seg fault is around _configureSolver function in rdesigner when spineCompt.path is going to assign to stoich.reacSystemPath.

if hasattr( self, 'spineCompt' ):
........
smstoich.reacSystemPath = self.spineCompt.path + "/##"

I further debugged to see the reaction and its substrate, product and volume

for reaction

Name : CaM_bind_CaMKII

sub: [<Id: id=568 path=/model[0]/chem[0]/spine[0]/Ca_CaM class=Pool>] 9.243503319865049e-20
[<Id: id=570 path=/model[0]/chem[0]/spine[0]/CaMKII class=Pool>] 9.243503319865049e-20

prd : [<Id: id=578 path=/model[0]/chem[0]/psd[0]/Ca_CaM_CaMKII class=Pool>] 1.188231417108964e-20

The product Ca_CaM_CaMKII is from different compartment

B. -------------------- porting moose-core for the same example --------------------
RuntimeError: getLookupValueFinfoItem::NotImplemented error
rdeignuer.py @ def _buildAdaptor ()

elecComptList = moose.element( '/model/elec').spineIdsFromCompartmentIds[ mesh.elecComptList ]

from moose-examples.

Fixed with latest moose-core git commit 33d1c249da9ba1e

from moose-examples.